FastQCFastQC Report
Wed 15 May 2019
SRR1503994.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1503994.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40828637
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG2193580.5372650573664755No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC684870.1677425577542547No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG515330.1262177818965644No Hit
GGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCT444170.10878883857915707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)