FastQCFastQC Report
Wed 15 May 2019
SRR1503996.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1503996.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32243739
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG1896790.588266143700022No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC689030.213694199670826No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG533320.165402653829942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)